U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Early-responsive to dehydration stress protein (ERD4) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824616, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Early-responsive to dehydration stress protein (ERD4)
Primary source
TAIR:AT3G54510
Locus tag
AT3G54510
See related
Araport:AT3G54510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (20180007..20183588)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene RNA polymerase II fifth largest subunit, E Neighboring gene agglutinin-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001125365.2
NM_001339677.1
NM_001339678.1
NM_001339679.1
NM_001339680.1
NM_115308.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium-activated cation channel activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Early-responsive to dehydration stress protein (ERD4)
NP_001118837.1
  • Early-responsive to dehydration stress protein (ERD4); LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_191015.2
  • Early-responsive to dehydration stress protein (ERD4); LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: hypothetical protein 1 (TAIR:AT3G01100.1); Has 1250 Blast hits to 1225 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 176; Fungi - 586; Plants - 385; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20180007..20183588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001125365.2 → NP_001118837.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118837.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JCY2, Q9M1H6
    UniProtKB/TrEMBL
    A0A097NUQ7, A0A178VE78, A0A384KJE0
    Conserved Domains (2) summary
    COG5594
    Location:6 → 683
    COG5594; Uncharacterized integral membrane protein [Function unknown]
    pfam02714
    Location:350 → 616
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate

  2. NM_001339678.1 → NP_001325839.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H4A0

  3. NM_001339677.1 → NP_001325838.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMF9

  4. NM_115308.3 → NP_191015.2  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191015.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3H4A0
    Conserved Domains (2) summary
    pfam02714
    Location:203 → 522
    RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
    pfam13967
    Location:1 → 73
    RSN1_TM; Late exocytosis, associated with Golgi transport

  5. NM_001339679.1 → NP_001325836.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMF7

  6. NM_001339680.1 → NP_001325837.1  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMF8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JCY2.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.