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Ribosomal protein S26e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824801, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S26e family protein
Primary source
TAIR:AT3G56340
Locus tag
AT3G56340
See related
Araport:AT3G56340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5P19.4
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (20892007..20893478, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Melibiase family protein Neighboring gene PAP/OAS1 substrate-binding domain superfamily Neighboring gene N2,N2-dimethylguanosine tRNA methyltransferase Neighboring gene Iron/manganese superoxide dismutase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Late ribosomal protein localization in Arabidopsis thaliana differs to that in Saccharomyces cerevisiae. Palm D, et al. FEBS Open Bio, 2018 Sep. PMID 30186745, Free PMC Article
  2. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
  3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
  4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_115492.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytosolic ribosome HDA PubMed 
part_of cytosolic small ribosomal subunit HDA PubMed 
colocalizes_with nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
part_of small ribosomal subunit IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Ribosomal protein S26e family protein
NP_191193.1
  • Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40510.1); Has 761 Blast hits to 761 proteins in 271 species: Archae - 53; Bacteria - 0; Metazoa - 311; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20892007..20893478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115492.4 → NP_191193.1  Ribosomal protein S26e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191193.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LYK9
    UniProtKB/TrEMBL
    A0A178VFW7, A0A5S9XN14, A0A654FGB0
    Conserved Domains (1) summary
    PLN00186
    Location:1 → 109
    PLN00186; ribosomal protein S26; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LYK9.1

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