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Single-stranded nucleic acid binding R3H protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824835, updated on 18-Sep-2024

Summary

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Official Full Name
Single-stranded nucleic acid binding R3H protein
Primary source
TAIR:AT3G56680
Locus tag
AT3G56680
See related
Araport:AT3G56680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (20991280..20993686)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein) Neighboring gene basic region/leucine zipper motif protein 49 Neighboring gene F-box/associated interaction domain protein Neighboring gene Cam interacting protein 111 Neighboring gene fatty acid reductase 6 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_115527.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Single-stranded nucleic acid binding R3H protein
NP_191227.1
  • Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT2G40960.1); Has 389 Blast hits to 389 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 53; Plants - 134; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    20991280..20993686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115527.4 → NP_191227.1  Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191227.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VEX4, A0A384LLC6, A0A5S9XLE9, Q9LET8
    Conserved Domains (2) summary
    cd02642
    Location:37 → 104
    R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
    pfam12752
    Location:129 → 177
    SUZ; SUZ domain
Nucleotide Protein
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