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Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824840, updated on 18-Sep-2024

Summary

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Official Full Name
Putative endonuclease or glycosyl hydrolase
Primary source
TAIR:AT3G56730
Locus tag
AT3G56730
See related
Araport:AT3G56730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (21013703..21015157)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene sigma factor binding protein 1 Neighboring gene pre-mRNA-splicing factor Neighboring gene Ubiquitin-associated (UBA) protein Neighboring gene ncRNA Neighboring gene plant/protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115532.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative endonuclease or glycosyl hydrolase
NP_001190108.1
  • Putative endonuclease or glycosyl hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62050.1).
NP_191232.2
  • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62050.1); Has 138 Blast hits to 136 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21013703..21015157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339811.1 → NP_001325517.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLF8, A0A654FHB4, F4J0R7
    Conserved Domains (1) summary
    cd10910
    Location:18 → 127
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

  2. NM_001339812.1 → NP_001325516.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLH0, A0A5S9XLF8
    Conserved Domains (1) summary
    cd10910
    Location:18 → 114
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

  3. NM_001339813.1 → NP_001325519.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLH3

  4. NM_001203179.1 → NP_001190108.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190108.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLF8, A0A654FHB4, F4J0R7
    Conserved Domains (1) summary
    cd10910
    Location:18 → 127
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

  5. NM_001339814.1 → NP_001325518.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLF8, Q9LET4
    Conserved Domains (1) summary
    cd10910
    Location:10 → 119
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins

  6. NM_115532.4 → NP_191232.2  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191232.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLF8, F4J0R8
    Conserved Domains (1) summary
    cd10910
    Location:12 → 121
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
Nucleotide Protein
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