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binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824873, updated on 18-Sep-2024

Summary

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Official Full Name
binding protein
Primary source
TAIR:AT3G57060
Locus tag
AT3G57060
See related
Araport:AT3G57060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Sequence:
Chromosome: 3; NC_003074.8 (21114798..21121160, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene response regulator 9 Neighboring gene cystathionine beta-lyase Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Glutaredoxin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility. Schubert V, et al. Chromosoma, 2013 Dec. PMID 23929493
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CAP-D2 is essential for viability, fertility and euchromatin organisation
    Title: The Arabidopsis CAP-D proteins are required for correct chromatin organisation, growth and fertility.
Submit: New GeneRIF Correction

General gene information

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NM_001203185.1
NM_001339840.1
NM_115565.2

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in chromatin organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitotic cell cycle IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in mitotic chromosome condensation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
binding protein
NP_001190114.1
  • binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1).
NP_191265.2
  • binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1); Has 13948 Blast hits to 8962 proteins in 742 species: Archae - 66; Bacteria - 1309; Metazoa - 5536; Fungi - 1705; Plants - 572; Viruses - 208; Other Eukaryotes - 4552 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21114798..21121160 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115565.2 → NP_191265.2  binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191265.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLQ4, A0A654FGI6
    Conserved Domains (4) summary
    COG5098
    Location:61 → 1156
    COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
    pfam08202
    Location:1151 → 1270
    MIS13; Mis12-Mtw1 protein family
    pfam12717
    Location:980 → 1145
    Cnd1; non-SMC mitotic condensation complex subunit 1
    pfam12922
    Location:80 → 241
    Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term

  2. NM_001339840.1 → NP_001325687.1  binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1I9LM04, F4J245, Q9M1J4
    UniProtKB/TrEMBL
    A0A5S9XLQ4, A0A654FGI6

  3. NM_001203185.1 → NP_001190114.1  binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190114.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLQ4, A0A654FGI6, F4J246
    Conserved Domains (4) summary
    COG5098
    Location:61 → 1156
    COG5098; Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
    pfam08202
    Location:1151 → 1270
    MIS13; Mis12-Mtw1 protein family
    pfam12717
    Location:980 → 1145
    Cnd1; non-SMC mitotic condensation complex subunit 1
    pfam12922
    Location:80 → 241
    Cnd1_N; non-SMC mitotic condensation complex subunit 1, N-term
Nucleotide Protein
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