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SDP1-LIKE sugar-dependent 1-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824881, updated on 18-Sep-2024

Summary

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Official Symbol
SDP1-LIKE
Official Full Name
sugar-dependent 1-like protein
Primary source
TAIR:AT3G57140
Locus tag
AT3G57140
See related
Araport:AT3G57140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
sugar-dependent 1-like
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Genomic context

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See SDP1-LIKE in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (21150242..21153636, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Ankyrin repeat family protein / BTB/POZ domain-containing protein Neighboring gene homologue of NAP57 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Storage oil hydrolysis during early seedling growth. Quettier AL, et al. Plant Physiol Biochem, 2009 Jun. PMID 19136267
  2. Seed storage oil mobilization is important but not essential for germination or seedling establishment in Arabidopsis. Kelly AA, et al. Plant Physiol, 2011 Oct. PMID 21825108, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_115573.4
NM_202720.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables triacylglycerol lipase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
sugar-dependent 1-like protein
NP_191273.1
  • sugar-dependent 1-like (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Patatin-like phospholipase family protein (TAIR:AT5G04040.1); Has 1079 Blast hits to 1061 proteins in 366 species: Archae - 0; Bacteria - 487; Metazoa - 11; Fungi - 361; Plants - 73; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink).
NP_974449.1
  • sugar-dependent 1-like (SDP1-LIKE); FUNCTIONS IN: GTP binding; INVOLVED IN: metabolic process, lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Protein of unknown function DUF3336 (InterPro:IPR021771), ARF/SAR superfamily (InterPro:IPR006689), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: Patatin-like phospholipase family protein (TAIR:AT5G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21150242..21153636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115573.4 → NP_191273.1  sugar-dependent 1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191273.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1I6
    UniProtKB/TrEMBL
    A0A178V781, A0A5S9XLN1, A0A654FH60
    Conserved Domains (2) summary
    cd07231
    Location:163 → 570
    Pat_SDP1-like; Sugar-Dependent 1 like lipase
    pfam11815
    Location:97 → 226
    DUF3336; Domain of unknown function (DUF3336)

  2. NM_202720.2 → NP_974449.1  sugar-dependent 1-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974449.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M1I6
    UniProtKB/TrEMBL
    A0A178V781, A0A5S9XLN1, A0A654FH60
    Conserved Domains (2) summary
    cd07231
    Location:163 → 570
    Pat_SDP1-like; Sugar-Dependent 1 like lipase
    pfam11815
    Location:97 → 226
    DUF3336; Domain of unknown function (DUF3336)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9M1I6.1

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