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tRNA-splicing endonuclease subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824903, updated on 18-Sep-2024

Summary

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Official Full Name
tRNA-splicing endonuclease subunit
Primary source
TAIR:AT3G57360
Locus tag
AT3G57360
See related
Araport:AT3G57360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (21225540..21227039)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock amino-terminal domain protein (DUF1977) Neighboring gene ncRNA Neighboring gene Nucleoporin interacting component (Nup93/Nic96-like) family protein Neighboring gene Cyclin family protein Neighboring gene Glycosyltransferase family 61 protein Neighboring gene AGAMOUS-like 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115596.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit
NP_191295.4
  • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21225540..21227039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115596.6 → NP_191295.4  tRNA-splicing endonuclease subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191295.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCV1, A0A384KJC5, Q6DBN3, Q9M2L1
    Conserved Domains (2) summary
    pfam12928
    Location:31 → 92
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:80 → 134
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
Nucleotide Protein
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