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RBL15 RHOMBOID-like protein 15 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825015, updated on 18-Sep-2024

Summary

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Official Symbol
RBL15
Official Full Name
RHOMBOID-like protein 15
Primary source
TAIR:AT3G58460
Locus tag
AT3G58460
See related
Araport:AT3G58460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11; ATRBL11; ATRBL15; RBL11; rhomboid-like protein 11; RHOMBOID-like protein 15
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Genomic context

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See RBL15 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Sequence:
Chromosome: 3; NC_003074.8 (21623179..21626701, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene TRAF-like superfamily protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene nucleic acid binding / methyltransferase Neighboring gene calmodulin-binding family protein Neighboring gene Phosphatidic acid phosphatase (PAP2) family protein Neighboring gene protein phosphatase 2A-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001203197.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
RHOMBOID-like protein 15
NP_001190126.1
  • RHOMBOID-like protein 15 (RBL15); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 14 (TAIR:AT3G17611.1).
NP_567064.1
  • RHOMBOID-like protein 15 (RBL15); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 14 (TAIR:AT3G17611.1); Has 3199 Blast hits to 3199 proteins in 1221 species: Archae - 73; Bacteria - 2108; Metazoa - 163; Fungi - 156; Plants - 314; Viruses - 3; Other Eukaryotes - 382 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21623179..21626701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115708.4 → NP_567064.1  RHOMBOID-like protein 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567064.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z2U1, Q8L7A1, Q8LB17, Q9M2H0
    UniProtKB/TrEMBL
    A0A178VGV9, A0A5S9XLY2
    Conserved Domains (3) summary
    cd14287
    Location:364 → 399
    UBA_At3g58460_like; UBA domain found in uncharacterized protein At3g58460 from Arabidopsis thaliana and its homologs from other plants
    TIGR00601
    Location:299 → 400
    rad23; UV excision repair protein Rad23
    pfam01694
    Location:58 → 212
    Rhomboid; Rhomboid family

  2. NM_001203197.1 → NP_001190126.1  RHOMBOID-like protein 15 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190126.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XLY2, F4J5V3
    Conserved Domains (2) summary
    cd14287
    Location:387 → 422
    UBA_At3g58460_like; UBA domain found in uncharacterized protein At3g58460 from Arabidopsis thaliana and its homologs from other plants
    pfam01694
    Location:81 → 235
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LB17.2

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