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Cand3 tobamovirus multiplication protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825078, updated on 18-Sep-2024

Summary

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Official Symbol
Cand3
Official Full Name
tobamovirus multiplication protein
Primary source
TAIR:AT3G59090
Locus tag
AT3G59090
See related
Araport:AT3G59090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
candidate G-protein Coupled Receptor 3
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Genomic context

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See Cand3 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
13
Sequence:
Chromosome: 3; NC_003074.8 (21839143..21842781)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene glucan synthase-like 11 Neighboring gene Protein kinase superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001035815.1
NM_001339949.1
NM_115771.4
NM_180388.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tobamovirus multiplication protein
NP_001030892.1
  • LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_567077.1
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 198 Blast hits to 197 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 190; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
NP_850719.1
  • CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    21839143..21842781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180388.3 → NP_850719.1  tobamovirus multiplication protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850719.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VC02, A0A384KUF4, A0A7G2ETZ6, B9DFZ1
    Conserved Domains (1) summary
    pfam06454
    Location:23 → 319
    DUF1084; Protein of unknown function (DUF1084)

  2. NM_001339949.1 → NP_001325460.1  tobamovirus multiplication protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LLB0, A0A7G2ETZ6
    Conserved Domains (1) summary
    pfam06454
    Location:114 → 257
    DUF1084; Protein of unknown function (DUF1084)

  3. NM_115771.4 → NP_567077.1  tobamovirus multiplication protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567077.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XNW5, A0A654FJ47, Q945Q2
    Conserved Domains (1) summary
    pfam06454
    Location:23 → 319
    DUF1084; Protein of unknown function (DUF1084)

  4. NM_001035815.1 → NP_001030892.1  tobamovirus multiplication protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030892.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2ETZ6, B9DGA1
    Conserved Domains (1) summary
    pfam06454
    Location:27 → 313
    DUF1084; Protein of unknown function (DUF1084)
Nucleotide Protein
Heading Accession and Version

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