Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Pentatricopeptide repeat (PPR) superfamily protein
Primary source: TAIR:AT3G59300
Locus tag: AT3G59300
See related: Araport:AT3G59300
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 13

Sequence:: Chromosome: 3; NC_003074.8 (21918321..21922706)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001339958.1

Supported by ESTs:

NM_001339959.1

Supported by ESTs:

NM_115792.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Pentatricopeptide repeat (PPR) superfamily protein

NP_567080.1

Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G24060.1); Has 75 Blast hits to 73 proteins in 16 species: Archae - 0; Bacteria - 6; Metazoa - 1; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

21918321..21922706

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_115792.3 → NP_567080.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_567080.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2EU08, Q949V7

Conserved Domains (1) summary

pfam10615
Location:390 → 437

DUF2470; Protein of unknown function (DUF2470)
NM_001339958.1 → NP_001325760.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LM78, A0A5S9XM91
NM_001339959.1 → NP_001325759.1 Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1I9LM77, A0A654FJ69, Q9LX41

Conserved Domains (1) summary

pfam10615
Location:396 → 443

DUF2470; Protein of unknown function (DUF2470)