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glycine-rich protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825133, updated on 18-Sep-2024

Summary

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Official Full Name
glycine-rich protein
Primary source
TAIR:AT3G59640
Locus tag
AT3G59640
See related
Araport:AT3G59640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (22028649..22030505)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Mannose-binding lectin superfamily protein Neighboring gene diphthamide synthesis DPH2 family protein Neighboring gene mitochondrial ribosomal protein L51/S25/CI-B8 family protein Neighboring gene C2 domain-containing protein / GRAM domain-containing protein Neighboring gene elongation factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis nonhost resistance gene PSS1 confers immunity against an oomycete and a fungal pathogen but not a bacterial pathogen that cause diseases in soybean. Sumit R, et al. BMC Plant Biol, 2012 Jun 13. PMID 22694952, Free PMC Article
  2. Arabidopsis Novel Glycine-Rich Plasma Membrane PSS1 Protein Enhances Disease Resistance in Transgenic Soybean Plants. Wang B, et al. Plant Physiol, 2018 Jan. PMID 29101280, Free PMC Article
  3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis PSS1 is a novel nonhost resistance gene that confers a new form of nonhost resistance.[PSS1]
    Title: Arabidopsis nonhost resistance gene PSS1 confers immunity against an oomycete and a fungal pathogen but not a bacterial pathogen that cause diseases in soybean.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001084845.2
NM_115826.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
colocalizes_with plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
glycine-rich protein
NP_001078314.1
  • glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43630.1); Has 114 Blast hits to 114 proteins in 30 species: Archae - 0; Bacteria - 4; Metazoa - 37; Fungi - 4; Plants - 60; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
NP_191523.1
  • glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43630.1); Has 114 Blast hits to 114 proteins in 30 species: Archae - 0; Bacteria - 4; Metazoa - 37; Fungi - 4; Plants - 60; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22028649..22030505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084845.2 → NP_001078314.1  glycine-rich protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078314.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAG8, A0A384LIS6, A0A654FJ99, Q9M1A4

  2. NM_115826.3 → NP_191523.1  glycine-rich protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191523.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VAG8, A0A384LIS6, A0A654FJ99, Q9M1A4
Nucleotide Protein
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