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bZIP domain class transcription factor (DUF630 and DUF632) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825203, updated on 18-Sep-2024

Summary

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Official Full Name
bZIP domain class transcription factor (DUF630 and DUF632)
Primary source
TAIR:AT3G60320
Locus tag
AT3G60320
See related
Araport:AT3G60320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (22291886..22295529, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RWD domain-containing protein Neighboring gene acyl-CoA synthetase family protein Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene H[+]-ATPase 7 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene ARABIDILLO-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Xu N, et al. Plant Cell, 2016 Feb. PMID 26744214, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_115896.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to nitrate IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nitrate transmembrane transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nitrogen compound transport IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to nitrate IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to nitrogen compound IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
bZIP domain class transcription factor (DUF630 and DUF632)
NP_191591.2
  • Protein of unknown function (DUF630 and DUF632); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF630 and DUF632) (TAIR:AT1G02110.1); Has 6322 Blast hits to 3163 proteins in 311 species: Archae - 2; Bacteria - 139; Metazoa - 1165; Fungi - 535; Plants - 1058; Viruses - 107; Other Eukaryotes - 3316 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22291886..22295529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115896.3 → NP_191591.2  bZIP domain class transcription factor (DUF630 and DUF632) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191591.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56XC8, Q93YU8, Q9LY33
    UniProtKB/TrEMBL
    A0A178VF88, A0A5S9XMR7, A0A654FJH5
    Conserved Domains (3) summary
    pfam04782
    Location:357 → 660
    DUF632; Protein of unknown function (DUF632)
    pfam04783
    Location:1 → 59
    DUF630; Protein of unknown function (DUF630)
    cl28929
    Location:56 → 138
    VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93YU8.1

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