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cotton fiber protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825209, updated on 18-Sep-2024

Summary

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Official Full Name
cotton fiber protein
Primary source
TAIR:AT3G60380
Locus tag
AT3G60380
See related
Araport:AT3G60380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (22316771..22319628, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene embryo sac development arrest 14 Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene homeobox-leucine zipper protein 3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115902.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cotton fiber protein
NP_191597.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT4G16790.1); Has 6102 Blast hits to 3981 proteins in 424 species: Archae - 6; Bacteria - 372; Metazoa - 2603; Fungi - 655; Plants - 291; Viruses - 28; Other Eukaryotes - 2147 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22316771..22319628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115902.3 → NP_191597.1  cotton fiber protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191597.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XMK1, A0A654FJG6, Q9M221
    Conserved Domains (1) summary
    pfam05553
    Location:700 → 725
    DUF761; Cotton fibre expressed protein
Nucleotide Protein
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