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Integrase-type DNA-binding superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825220, updated on 18-Sep-2024

Summary

Official Full Name
Integrase-type DNA-binding superfamily protein
Primary source
TAIR:AT3G60490
Locus tag
AT3G60490
See related
Araport:AT3G60490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
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Genomic context

Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (22349308..22350458)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein, putative (DUF247) Neighboring gene StAR lipid transfer-like protein Neighboring gene 3'-5'-exoribonuclease family protein Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene zinc ion-binding protein

General gene information

Markers

NM_115913.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Integrase-type DNA-binding superfamily protein
NP_191608.1
  • Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G44940.1); Has 5687 Blast hits to 5580 proteins in 251 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 6; Plants - 5663; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22349308..22350458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_115913.3NP_191608.1  Integrase-type DNA-binding superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191608.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9M210
    UniProtKB/TrEMBL
    A0A5S9XMR5, A0A7G2EZC5
    Conserved Domains (1) summary
    smart00380
    Location:70130
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs