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BRH1 brassinosteroid-responsive RING-H2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825319, updated on 18-Sep-2024

Summary

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Official Symbol
BRH1
Official Full Name
brassinosteroid-responsive RING-H2
Primary source
TAIR:AT3G61460
Locus tag
AT3G61460
See related
Araport:AT3G61460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
brassinosteroid-responsive RING-H2
Summary
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
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Genomic context

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See BRH1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (22741511..22742772, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene cysteine synthase C1 Neighboring gene syntaxin of plants 73 Neighboring gene photosystem I light harvesting complex protein Neighboring gene Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Wang X, et al. Sci China Life Sci, 2018 Jan. PMID 28887625
  2. Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana. Molnár G, et al. Planta, 2002 May. PMID 12012249
  3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_116011.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in brassinosteroid mediated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of leaf morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of plant organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to brassinosteroid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to brassinosteroid IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to chitin IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
brassinosteroid-responsive RING-H2
NP_191705.1
  • brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22741511..22742772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116011.2 → NP_191705.1  brassinosteroid-responsive RING-H2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191705.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A178VCF4, Q9XF92
    UniProtKB/TrEMBL
    A0A384KKT2, A0A5S9XMV1
    Conserved Domains (2) summary
    PHA02926
    Location:51 → 140
    PHA02926; zinc finger-like protein; Provisional
    cd16448
    Location:94 → 137
    RING-H2; H2 subclass of RING (RING-H2) finger and its variants
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XF92.1

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