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Putative endonuclease or glycosyl hydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825378, updated on 18-Sep-2024

Summary

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Official Full Name
Putative endonuclease or glycosyl hydrolase
Primary source
TAIR:AT3G62050
Locus tag
AT3G62050
See related
Araport:AT3G62050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_003074.8 (22978002..22979158)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene metal ion-binding protein Neighboring gene germin-like protein 10 Neighboring gene rotamase CYP 4 Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene Pectinacetylesterase family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_116070.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative endonuclease or glycosyl hydrolase
NP_567124.1
  • Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    22978002..22979158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116070.3 → NP_567124.1  Putative endonuclease or glycosyl hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567124.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XNP0, A0A654FJY2, A6QR85, Q8LC17
    Conserved Domains (1) summary
    cd10910
    Location:14 → 131
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
Nucleotide Protein
Heading Accession and Version

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