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TKL TIC-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825493, updated on 18-Sep-2024

Summary

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Official Symbol
TKL
Official Full Name
TIC-like protein
Primary source
TAIR:AT3G63180
Locus tag
AT3G63180
See related
Araport:AT3G63180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTKL; TIC-like; TICKLE
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Genomic context

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See TKL in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (23336092..23340340, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene outer envelope membrane protein Neighboring gene Chalcone-flavanone isomerase family protein Neighboring gene ribosome recycling factor, chloroplast precursor Neighboring gene PATATIN-like protein 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084865.2
NM_116183.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in regulation of circadian rhythm IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TIC-like protein
NP_001078334.1
  • TIC-like (TKL); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.1); Has 1941 Blast hits to 1280 proteins in 240 species: Archae - 0; Bacteria - 154; Metazoa - 659; Fungi - 350; Plants - 117; Viruses - 3; Other Eukaryotes - 658 (source: NCBI BLink).
NP_191877.2
  • TIC-like (TKL); BEST Arabidopsis thaliana protein match is: time for coffee (TAIR:AT3G22380.2); Has 2025 Blast hits to 1341 proteins in 246 species: Archae - 0; Bacteria - 158; Metazoa - 691; Fungi - 375; Plants - 123; Viruses - 3; Other Eukaryotes - 675 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    23336092..23340340 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116183.4 → NP_191877.2  TIC-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_191877.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V7X4, A0A654FKA3, F4J0W8
    Conserved Domains (1) summary
    pfam03153
    Location:708 → 898
    TFIIA; Transcription factor IIA, alpha/beta subunit

  2. NM_001084865.2 → NP_001078334.1  TIC-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078334.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XNK9, A8MRY5
    Conserved Domains (1) summary
    pfam03153
    Location:700 → 890
    TFIIA; Transcription factor IIA, alpha/beta subunit
Nucleotide Protein
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