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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825757, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT4G04370
Locus tag
AT4G04370
See related
Araport:AT4G04370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19B17.9; T19B17_9
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (2134060..2136321, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ERD (early-responsive to dehydration stress) family protein Neighboring gene tRNA synthetase class I (I, L, M and V) family protein Neighboring gene transmembrane protein, putative (DUF1068) Neighboring gene miscRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_116675.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_192346.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 51385 Blast hits to 13710 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 119; Plants - 50626; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2134060..2136321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116675.2 → NP_192346.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192346.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XE98
    UniProtKB/TrEMBL
    A0A178UY39, A0A5S9XPY8
    Conserved Domains (4) summary
    TIGR00756
    Location:113 → 145
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:516 → 543
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:211 → 241
    PPR; PPR repeat
    pfam13041
    Location:178 → 221
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XE98.1

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