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LOC8258305 ABC transporter B family member 28 [ Ricinus communis (castor bean) ]

Gene ID: 8258305, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8258305
Gene description
ABC transporter B family member 28
Locus tag
RCOM_1497580
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8258305 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 4 NC_063259.1 (29783648..29789227, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994278.1 (419015..424639)

Chromosome 4 - NC_063259.1Genomic Context describing neighboring genes Neighboring gene calcium-dependent protein kinase 26 Neighboring gene uncharacterized LOC8258306 Neighboring gene post-GPI attachment to proteins factor 3 Neighboring gene dehydration-responsive element-binding protein 1A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter B family member 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063259.1 Reference ASM1957865v1

    Range
    29783648..29789227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002510803.4 → XP_002510849.1  ABC transporter B family member 28

    See identical proteins and their annotated locations for XP_002510849.1

    UniProtKB/TrEMBL
    B9R9H4
    Conserved Domains (3) summary
    COG1132
    Location:106 → 710
    MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
    cl00549
    Location:113 → 379
    ABC_membrane; ABC transporter transmembrane region
    cl21455
    Location:468 → 707
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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