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LpxD1 Trimeric LpxA-like enzymes superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 825869, updated on 18-Sep-2024

Summary

Official Symbol
LpxD1
Official Full Name
Trimeric LpxA-like enzymes superfamily protein
Primary source
TAIR:AT4G05210
Locus tag
AT4G05210
See related
Araport:AT4G05210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtLpxD1; C17L7.130; C17L7_130; lipid X D1
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Genomic context

See LpxD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Sequence:
Chromosome: 4; NC_003075.7 (2682613..2685896)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene photosystem II subunit Q-2 Neighboring gene kinesin 5 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 25 Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Ubiquitin-like superfamily protein Neighboring gene Ubiquitin-like superfamily protein

General gene information

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
involved_in lipid X metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Trimeric LpxA-like enzymes superfamily protein
NP_192430.2
  • Trimeric LpxA-like enzymes superfamily protein; FUNCTIONS IN: transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G21220.1); Has 11511 Blast hits to 11440 proteins in 1956 species: Archae - 52; Bacteria - 7646; Metazoa - 8; Fungi - 29; Plants - 63; Viruses - 3; Other Eukaryotes - 3710 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    2682613..2685896
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340544.1NP_001328366.1  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4F5, A0A5S9XPP5
  2. NM_001340545.1NP_001328365.1  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B4E8, A0A5S9XPP5
  3. NM_116760.2NP_192430.2  Trimeric LpxA-like enzymes superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192430.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JGP6, Q9M0X4
    UniProtKB/TrEMBL
    A0A5S9XPP5
    Conserved Domains (1) summary
    cd03352
    Location:93289
    LbH_LpxD; UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2, ...