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CSLC12 Cellulose-synthase-like C12 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826301, updated on 18-Sep-2024

Summary

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Official Symbol
CSLC12
Official Full Name
Cellulose-synthase-like C12
Primary source
TAIR:AT4G07960
Locus tag
AT4G07960
See related
Araport:AT4G07960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCSLC12; CELLULOSE-SYNTHASE LIKE C12; Cellulose-synthase-like C12; F1K3.3; F1K3_3
Summary
encodes a gene similar to cellulose synthase
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Genomic context

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See CSLC12 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Sequence:
Chromosome: 4; NC_003075.7 (4802253..4805647, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase, subunit M, archaeal Neighboring gene uncharacterized protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The synthesis of xyloglucan, an abundant plant cell wall polysaccharide, requires CSLC function. Kim SJ, et al. Proc Natl Acad Sci U S A, 2020 Aug 18. PMID 32737163, Free PMC Article
  2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_001340568.1
NM_116866.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulose synthase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables glycosyltransferase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein homodimerization activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in cell wall organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plant organ development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in pollen tube development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in Golgi apparatus ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
Cellulose-synthase-like C12
NP_192536.1
  • Cellulose-synthase-like C12 (CSLC12); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Cellulose-synthase-like C5 (TAIR:AT4G31590.1); Has 5318 Blast hits to 5313 proteins in 1549 species: Archae - 201; Bacteria - 4094; Metazoa - 52; Fungi - 109; Plants - 510; Viruses - 19; Other Eukaryotes - 333 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    4802253..4805647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116866.3 → NP_192536.1  Cellulose-synthase-like C12 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192536.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZQB9
    UniProtKB/TrEMBL
    A0A178UW53, A0A384KRZ4, A0A7G2EY49, W8Q306
    Conserved Domains (1) summary
    cl11394
    Location:241 → 477
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. NM_001340568.1 → NP_001328773.1  Cellulose-synthase-like C12 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZQB9
    UniProtKB/TrEMBL
    A0A178UW53, A0A384KRZ4, A0A7G2EY49, W8Q306
    Conserved Domains (1) summary
    cl11394
    Location:241 → 477
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZQB9.1

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