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LOC8263464 D-amino-acid transaminase, chloroplastic [ Ricinus communis (castor bean) ]

Gene ID: 8263464, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8263464
Gene description
D-amino-acid transaminase, chloroplastic
Locus tag
RCOM_0651450
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8263464 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 9 NC_063264.1 (22333159..22335978, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994416.1 (551277..554107, complement)

Chromosome 9 - NC_063264.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107261591 Neighboring gene probable aminotransferase TAT2 Neighboring gene uncharacterized LOC125371068

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
D-amino-acid transaminase, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063264.1 Reference ASM1957865v1

    Range
    22333159..22335978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002523242.4 → XP_002523288.1  D-amino-acid transaminase, chloroplastic isoform X2

    See identical proteins and their annotated locations for XP_002523288.1

    UniProtKB/TrEMBL
    B9SBB9
    Conserved Domains (1) summary
    PLN02845
    Location:11 → 345
    PLN02845; Branched-chain-amino-acid aminotransferase-like protein

  2. XM_015721851.3 → XP_015577337.1  D-amino-acid transaminase, chloroplastic isoform X3

    Conserved Domains (1) summary
    PLN02845
    Location:12 → 293
    PLN02845; Branched-chain-amino-acid aminotransferase-like protein

  3. XM_015721850.3 → XP_015577336.1  D-amino-acid transaminase, chloroplastic isoform X1

    Conserved Domains (1) summary
    PLN02845
    Location:12 → 346
    PLN02845; Branched-chain-amino-acid aminotransferase-like protein
Nucleotide Protein
Heading Accession and Version

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