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LOC8263900 6-phosphogluconate dehydrogenase, decarboxylating 2 [ Ricinus communis (castor bean) ]

Gene ID: 8263900, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8263900
Gene description
6-phosphogluconate dehydrogenase, decarboxylating 2
Locus tag
RCOM_0876630
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8263900 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 5 NC_063260.1 (10422307..10425249)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994737.1 (57642..60604)

Chromosome 5 - NC_063260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107262178 Neighboring gene probable galacturonosyltransferase 9 Neighboring gene protein SOB FIVE-LIKE 3 Neighboring gene transfer RNA leucine (anticodon CAG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphogluconate dehydrogenase (decarboxylating) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-gluconate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
6-phosphogluconate dehydrogenase, decarboxylating 2
Names
6-phosphogluconate dehydrogenase, decarboxylating 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063260.1 Reference ASM1957865v1

    Range
    10422307..10425249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002530757.4 → XP_002530803.1  6-phosphogluconate dehydrogenase, decarboxylating 2

    See identical proteins and their annotated locations for XP_002530803.1

    UniProtKB/TrEMBL
    B9SXT4
    Conserved Domains (3) summary
    PLN02350
    Location:2 → 488
    PLN02350; phosphogluconate dehydrogenase (decarboxylating)
    pfam00393
    Location:186 → 479
    6PGD; 6-phosphogluconate dehydrogenase, C-terminal domain
    pfam03446
    Location:8 → 182
    NAD_binding_2; NAD binding domain of 6-phosphogluconate dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials