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GH9C3 glycosyl hydrolase 9C3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826706, updated on 18-Sep-2024

Summary

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Official Symbol
GH9C3
Official Full Name
glycosyl hydrolase 9C3
Primary source
TAIR:AT4G11050
Locus tag
AT4G11050
See related
Araport:AT4G11050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGH9C3; glycosyl hydrolase 9C3; T22B4.30; T22B4_30
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Genomic context

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See GH9C3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (6747234..6751536, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene mitochondrially targeted single-stranded DNA binding protein Neighboring gene HMG (high mobility group) box protein Neighboring gene WRKY family transcription factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340700.1
NM_001340701.1
NM_117175.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9C3
NP_192843.2
  • glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    6747234..6751536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117175.3 → NP_192843.2  glycosyl hydrolase 9C3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_192843.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82513, Q8L7I0
    UniProtKB/TrEMBL
    A0A654FN08
    Conserved Domains (3) summary
    PLN02171
    Location:21 → 626
    PLN02171; endoglucanase
    pfam09478
    Location:534 → 612
    CBM49; Carbohydrate binding domain CBM49
    cl02959
    Location:26 → 489
    Glyco_hydro_9; Glycosyl hydrolase family 9

  2. NM_001340700.1 → NP_001328090.1  glycosyl hydrolase 9C3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3K9, A0A654FN08

  3. NM_001340701.1 → NP_001328091.1  glycosyl hydrolase 9C3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B3L0, A0A654FN08, A0A7G2F2U2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7I0.1

Gene LinkOut

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