C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Primary source: TAIR:AT4G11610
Locus tag: AT4G11610
See related: Araport:AT4G11610
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T5C23.40; T5C23_40
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 5

Sequence:: Chromosome: 4; NC_003075.7 (7013729..7018089, complement)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

These data demonstrate that neither cytosolic nor mitochondrial NTRs are essential in plants.
Title: Inactivation of thioredoxin reductases reveals a complex interplay between thioredoxin and glutathione pathways in Arabidopsis development.

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General gene information

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NM_001340724.1

Supported by ESTs:

NM_117230.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in mitochondrion	ISM Inferred from Sequence Model more info
located_in vesicle	IDA Inferred from Direct Assay more info	PubMed

General protein information

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Preferred Names: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein

NP_192898.2

C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT3G57880.1); Has 4911 Blast hits to 3458 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2965; Fungi - 226; Plants - 1362; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

7013729..7018089 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001340723.1 → NP_001329168.1 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178UWX6, A0A1P8B6X8, A0A384KER6, A0A5S9XRF3

Conserved Domains (5) summary

cd04019
Location:439 → 589

C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

cd04022
Location:7 → 133

C2A_MCTP_PRT_plant; C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

cd08378
Location:275 → 399

C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

cd08379
Location:601 → 724

C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

pfam08372
Location:852 → 1007

PRT_C; Plant phosphoribosyltransferase C-terminal
NM_117230.4 → NP_192898.2 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_192898.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q84TJ7, Q9T0C8

UniProtKB/TrEMBL

A0A178UYC0, A0A5S9XRF3

Conserved Domains (5) summary

cd04019
Location:443 → 593

C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

cd04022
Location:7 → 133

C2A_MCTP_PRT_plant; C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

cd08378
Location:279 → 403

C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

cd08379
Location:605 → 728

C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

pfam08372
Location:856 → 1011

PRT_C; Plant phosphoribosyltransferase C-terminal
NM_001340724.1 → NP_001329169.1 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B6W6, A0A5S9XRF3, A0A654FNM4