U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

DNA topoisomerase 4 subunit B (DUF810) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826772, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
DNA topoisomerase 4 subunit B (DUF810)
Primary source
TAIR:AT4G11670
Locus tag
AT4G11670
See related
Araport:AT4G11670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T5C23.100; T5C23_100
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
25
Sequence:
Chromosome: 4; NC_003075.7 (7044401..7053148, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene winged-helix DNA-binding transcription factor family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001340726.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
DNA topoisomerase 4 subunit B (DUF810)
NP_001319905.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT5G06970.1); Has 193 Blast hits to 179 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 8; Plants - 166; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7044401..7053148 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340728.1 → NP_001329079.1  DNA topoisomerase 4 subunit B (DUF810) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6M0, A0A5S9XRN3, A0A654FNB1

  2. NM_001340727.1 → NP_001329078.1  DNA topoisomerase 4 subunit B (DUF810) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6L8, A0A5S9XRN3, A0A654FNB1

  3. NM_001340729.1 → NP_001329077.1  DNA topoisomerase 4 subunit B (DUF810) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B6M6, A0A5S9XRN3, A0A654FNB1
    Conserved Domains (1) summary
    pfam05664
    Location:166 → 837
    DUF810; Plant family of unknown function (DUF810)

  4. NM_001340726.1 → NP_001319905.1  DNA topoisomerase 4 subunit B (DUF810) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XRN3, A0A654FNB1, F4JP32
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.