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LOC8267827 probable 26S proteasome non-ATPase regulatory subunit 3 [ Ricinus communis (castor bean) ]

Gene ID: 8267827, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8267827
Gene description
probable 26S proteasome non-ATPase regulatory subunit 3
Locus tag
RCOM_1599350
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8267827 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 2 NC_063257.1 (991628..996712)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994277.1 (3693383..3697957, complement)

Chromosome 2 - NC_063257.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase ATL23 Neighboring gene uncharacterized LOC107260941 Neighboring gene ribonuclease P protein subunit p25-like protein Neighboring gene expansin-A11 Neighboring gene peroxidase 64

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of proteasome regulatory particle, lid subcomplex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 26S proteasome non-ATPase regulatory subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063257.1 Reference ASM1957865v1

    Range
    991628..996712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002510544.4 → XP_002510590.1  probable 26S proteasome non-ATPase regulatory subunit 3 isoform X1

    UniProtKB/TrEMBL
    B9R8E7
    Conserved Domains (2) summary
    pfam01399
    Location:314 → 421
    PCI; PCI domain
    pfam08375
    Location:424 → 467
    Rpn3_C; Proteasome regulatory subunit C-terminal

  2. XM_015720496.3 → XP_015575982.1  probable 26S proteasome non-ATPase regulatory subunit 3 isoform X2

    Conserved Domains (2) summary
    pfam01399
    Location:287 → 394
    PCI; PCI domain
    pfam08375
    Location:397 → 440
    Rpn3_C; Proteasome regulatory subunit C-terminal
Nucleotide Protein
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