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Homeodomain-like transcriptional regulator [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826887, updated on 18-Sep-2024

Summary

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Official Full Name
Homeodomain-like transcriptional regulator
Primary source
TAIR:AT4G12750
Locus tag
AT4G12750
See related
Araport:AT4G12750
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20K18.100; T20K18_100
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Genomic context

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Location:
chromosome: 4
Exon count:
18
Sequence:
Chromosome: 4; NC_003075.7 (7497698..7504716, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene HhH-GPD base excision DNA repair family protein Neighboring gene RPA-interacting protein A Neighboring gene Chaperone DnaJ-domain superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001340802.1

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Homeodomain-like transcriptional regulator
NP_001319916.1
  • Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G44180.1); Has 164 Blast hits to 146 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 152; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7497698..7504716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340802.1 → NP_001319916.1  Homeodomain-like transcriptional regulator [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UY47, A0A2H1ZEL5
Nucleotide Protein
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