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RNA-binding CRS1 / YhbY (CRM) domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826921, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding CRS1 / YhbY (CRM) domain protein
Primary source
TAIR:AT4G13070
Locus tag
AT4G13070
See related
Araport:AT4G13070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25G13.160; F25G13_160
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (7621346..7623402, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Acyl-ACP thioesterase Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene RALF-like 30 Neighboring gene xyloglucan endotransglucosylase/hydrolase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria. Lin WC, et al. Plant Cell Physiol, 2022 Feb 15. PMID 34752612
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria.
    Title: CFM6 is an Essential CRM Protein Required for the Splicing of nad5 Transcript in Arabidopsis Mitochondria.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_117376.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding CRS1 / YhbY (CRM) domain protein
NP_193043.2
  • RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G28480.1); Has 317 Blast hits to 276 proteins in 27 species: Archae - 2; Bacteria - 4; Metazoa - 5; Fungi - 0; Plants - 270; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7621346..7623402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117376.5 → NP_193043.2  RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193043.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UTY4, A0A5S9XRS6, Q67YJ7
    Conserved Domains (1) summary
    smart01103
    Location:182 → 267
    CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
Nucleotide Protein
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