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LRX3 Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 826964, updated on 18-Sep-2024

Summary

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Official Symbol
LRX3
Official Full Name
Leucine-rich repeat (LRR) family protein
Primary source
TAIR:AT4G13340
Locus tag
AT4G13340
See related
Araport:AT4G13340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
leucine-rich repeat/extensin 3; T9E8.80; T9E8_80
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Genomic context

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See LRX3 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (7758275..7761362)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 71, subfamily A, polypeptide 20 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene uncharacterized protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Leucine-rich repeat extensin proteins regulate plant salt tolerance in Arabidopsis. Zhao C, et al. Proc Natl Acad Sci U S A, 2018 Dec 18. PMID 30514814, Free PMC Article
  2. Arabidopsis leucine-rich repeat extensin (LRX) proteins modify cell wall composition and influence plant growth. Draeger C, et al. BMC Plant Biol, 2015 Jun 24. PMID 26099801, Free PMC Article
  3. Role of SH3 domain-containing proteins in clathrin-mediated vesicle trafficking in Arabidopsis. Lam BC, et al. Plant Cell, 2001 Nov. PMID 11701884, Free PMC Article
  4. Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Baumberger N, et al. Plant Physiol, 2003 Mar. PMID 12644681, Free PMC Article
  5. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_117407.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables peptide binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables structural constituent of cell wall ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall HDA PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 
located_in secretory vesicle HDA PubMed 

General protein information

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Preferred Names
Leucine-rich repeat (LRR) family protein
NP_193070.1
  • Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G24480.1); Has 637879 Blast hits to 129296 proteins in 3596 species: Archae - 1468; Bacteria - 134638; Metazoa - 215120; Fungi - 74599; Plants - 120849; Viruses - 14592; Other Eukaryotes - 76613 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    7758275..7761362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117407.3 → NP_193070.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193070.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9T0K5
    UniProtKB/TrEMBL
    A0A178UXP3, A0A654FNR6
    Conserved Domains (3) summary
    PLN00113
    Location:81 → 345
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    pfam04554
    Location:719 → 759
    Extensin_2; Extensin-like region
    sd00033
    Location:140 → 163
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9T0K5.1

Gene LinkOut

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