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structural constituent of ribosome protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827066, updated on 3-Dec-2024

Summary

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Official Full Name
structural constituent of ribosome protein
Primary source
TAIR:AT4G14250
Locus tag
AT4G14250
See related
Araport:AT4G14250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3165C; FCAALL.151
Summary
This locus is annotated as a protein-coding gene in TAIR10. Based on communication with Jean-Luc GALLOIS (April 2013), this gene is split into two UBX domain-containing pseudogenes: one retains the original name: AT4G14250 (Chr4:8213237..8211984), one given a new locus identifier AT4G14245 (Chr4:8210231..8208985). Note that the Map Detail Image on the locus detial page and in GBrowse will not be updated until after the next genome release.
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (8211984..8213237, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene structural constituent of ribosome protein Neighboring gene ncRNA Neighboring gene hypothetical protein (DUF295)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
structural constituent of ribosome protein
NP_001319935.1
  • structural constituent of ribosome; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), UAS (InterPro:IPR006577), Ribosomal protein L2, C-terminal (InterPro:IPR022669), UBX (InterPro:IPR001012), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: UBX domain-containing protein (TAIR:AT1G59550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8211984..8213237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340911.1 → NP_001319935.1  structural constituent of ribosome protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JUN8, O23283, P0DKI4
Nucleotide Protein
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