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Ankyrin repeat family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827084, updated on 18-Sep-2024

Summary

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Official Full Name
Ankyrin repeat family protein
Primary source
TAIR:AT4G14390
Locus tag
AT4G14390
See related
Araport:AT4G14390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3235W; FCAALL.188
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (8289610..8292203)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene cotton fiber protein Neighboring gene histone acetyltransferase subunit NuA4-domain protein Neighboring gene ankyrin repeat family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ankyrin repeat family protein
NP_193175.2
  • Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat family protein (TAIR:AT4G14400.1); Has 23458 Blast hits to 11336 proteins in 519 species: Archae - 46; Bacteria - 1569; Metazoa - 13305; Fungi - 1747; Plants - 2323; Viruses - 62; Other Eukaryotes - 4406 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8289610..8292203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001340932.1 → NP_001329542.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B825, A0A5S9XSA5

  2. NM_001340933.1 → NP_001329543.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B809

  3. NM_001340934.1 → NP_001329544.1  Ankyrin repeat family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B807, R9YWY5

  4. NM_117518.2 → NP_193175.2  Ankyrin repeat family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193175.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JVF4, R9YWY5
    Conserved Domains (5) summary
    COG0666
    Location:291 → 505
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:319 → 448
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:136 → 239
    Ank_2; Ankyrin repeats (3 copies)
    pfam13962
    Location:513 → 620
    PGG; Domain of unknown function
    sd00045
    Location:165 → 211
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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