U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CFM3B CRM family member 3B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827098, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
CFM3B
Official Full Name
CRM family member 3B
Primary source
TAIR:AT4G14510
Locus tag
AT4G14510
See related
Araport:AT4G14510
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCFM3B; CRM family member 3B; DL3295C; FCAALL.243
Summary
Encodes a CRM domain protein CFM3b. Homolog of CFM3a (AT3G23070). CFM3a is shown to function in the splicing of group IIB introns in chloroplasts.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CFM3B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (8336701..8341174, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene SMAD/FHA domain-containing protein Neighboring gene Polyketide cyclase/dehydrase and lipid transport superfamily protein Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase II-like protein Neighboring gene agamous-like MADS-box protein Neighboring gene nuclear factor Y, subunit B3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The bRPS6-Family Protein RFC3 Prevents Interference by the Splicing Factor CFM3b during Plastid rRNA Biogenesis in Arabidopsis thaliana. Nagashima Y, et al. Plants (Basel), 2020 Mar 4. PMID 32143506, Free PMC Article
  2. Two CRM protein subfamilies cooperate in the splicing of group IIB introns in chloroplasts. Asakura Y, et al. RNA, 2008 Nov. PMID 18799595, Free PMC Article
  3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_117531.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in Group II intron splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in RNA splicing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in plastid rRNA transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within seed development IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in seed development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in plastid IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
CRM family member 3B
NP_193187.3
  • CRM family member 3B (CFM3B); FUNCTIONS IN: RNA binding; INVOLVED IN: seed development; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRM family member 3A (TAIR:AT3G23070.1); Has 927 Blast hits to 829 proteins in 130 species: Archae - 3; Bacteria - 35; Metazoa - 203; Fungi - 82; Plants - 394; Viruses - 11; Other Eukaryotes - 199 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8336701..8341174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117531.4 → NP_193187.3  CRM family member 3B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193187.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JVH1, O23307
    UniProtKB/TrEMBL
    A0A5S9XSL6, A0A654FP94
    Conserved Domains (2) summary
    smart01103
    Location:423 → 507
    CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
    pfam01985
    Location:666 → 752
    CRS1_YhbY; CRS1 / YhbY (CRM) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JVH1.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools