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hAT transposon superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827161, updated on 18-Sep-2024

Summary

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Official Full Name
hAT transposon superfamily
Primary source
TAIR:AT4G15020
Locus tag
AT4G15020
See related
Araport:AT4G15020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3551W; FCAALL.174
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (8575342..8578729)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal L27e protein family Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene uncharacterized protein Neighboring gene folate-sensitive fragile site protein Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene NEP-interacting protein, putative (DUF239)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001160762.2
NM_117589.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hAT transposon superfamily
NP_001154234.1
  • hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
NP_193238.5
  • hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8575342..8578729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160762.2 → NP_001154234.1  hAT transposon superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154234.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FPH2, F4JJC1, Q8L717
    Conserved Domains (3) summary
    pfam04937
    Location:234 → 385
    DUF659; Protein of unknown function (DUF 659)
    pfam05699
    Location:583 → 672
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    cl02703
    Location:16 → 54
    zf-BED; BED zinc finger

  2. NM_117589.6 → NP_193238.5  hAT transposon superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193238.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654FPH2, F4JJC1, Q8L717
    Conserved Domains (3) summary
    pfam04937
    Location:234 → 385
    DUF659; Protein of unknown function (DUF 659)
    pfam05699
    Location:583 → 672
    Dimer_Tnp_hAT; hAT family C-terminal dimerization region
    cl02703
    Location:16 → 54
    zf-BED; BED zinc finger
Nucleotide Protein
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