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tRNA/rRNA methyltransferase (SpoU) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827225, updated on 18-Sep-2024

Summary

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Official Full Name
tRNA/rRNA methyltransferase (SpoU) family protein
Primary source
TAIR:AT4G15520
Locus tag
AT4G15520
See related
Araport:AT4G15520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3800W; FCAALL.322
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (8862744..8864646)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Photosystem II reaction center PsbP family protein Neighboring gene pyruvate orthophosphate dikinase Neighboring gene EamA-like transporter family Neighboring gene PH-response transcription factor Neighboring gene indole-3-acetate beta-D-glucosyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117642.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA methylation ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
tRNA/rRNA methyltransferase (SpoU) family protein
NP_193287.1
  • tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 7549 Blast hits to 7548 proteins in 2062 species: Archae - 19; Bacteria - 6000; Metazoa - 86; Fungi - 2; Plants - 92; Viruses - 0; Other Eukaryotes - 1350 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8862744..8864646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117642.4 → NP_193287.1  tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193287.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3U4, Q38889, Q8GYT1
    Conserved Domains (1) summary
    cd18096
    Location:6 → 146
    SpoU-like; SAM-dependent rRNA or tRNA methylase related to SpoU
Nucleotide Protein
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