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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827250, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT4G15720
Locus tag
AT4G15720
See related
Araport:AT4G15720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL3900W; FCAALL.369; REME2; Required for Efficiency of Mitochondrial Editing 2
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (8949460..8951540)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Proteinase inhibitor I25, cystatin, conserved region Neighboring gene miscRNA Neighboring gene CW-type Zinc Finger Neighboring gene SCR-like 11 Neighboring gene SCR-like 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria. Bentolila S, et al. RNA Biol, 2013. PMID 23807026, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. At4g15720 is required for editing of specific C targets in Arabidopsis mitochondria.
    Title: Quantitative trait locus mapping identifies REME2, a PPR-DYW protein required for editing of specific C targets in Arabidopsis mitochondria.
Submit: New GeneRIF Correction

General gene information

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NM_117663.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_193307.2
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 22 (TAIR:AT3G12770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    8949460..8951540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117663.4 → NP_193307.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193307.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23423, Q8VYH0
    UniProtKB/TrEMBL
    A0A178UYA6, A0A5S9XT32
    Conserved Domains (5) summary
    sd00004
    Location:304 → 331
    PPR; PPR repeat [structural motif]
    pfam01535
    Location:303 → 329
    PPR; PPR repeat
    pfam13041
    Location:93 → 141
    PPR_2; PPR repeat family
    pfam14432
    Location:478 → 606
    DYW_deaminase; DYW family of nucleic acid deaminases
    cl03252
    Location:368 → 395
    PPR; PPR repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYH0.1

Gene LinkOut

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