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Hyaluronan / mRNA binding family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827389, updated on 18-Sep-2024

Summary

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Official Full Name
Hyaluronan / mRNA binding family
Primary source
TAIR:AT4G16830
Locus tag
AT4G16830
See related
Araport:AT4G16830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4440W; FCAALL.13
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Genomic context

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Location:
chromosome: 4
Exon count:
7
Sequence:
Chromosome: 4; NC_003075.7 (9470370..9472594)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene VEFS-Box of polycomb protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis RNA-binding protein AtRGGA regulates tolerance to salt and drought stress. Ambrosone A, et al. Plant Physiol, 2015 May. PMID 25783413, Free PMC Article
  2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
  5. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtRGGA plays an important role in the mechanisms of plant response and adaptation to stress. [AtRGGA]
    Title: The Arabidopsis RNA-binding protein AtRGGA regulates tolerance to salt and drought stress.
Submit: New GeneRIF Correction

General gene information

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NM_001084930.1
NM_001084931.1
NM_117785.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cellular response to salt stress IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to osmotic stress IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm HDA PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
located_in nucleus HDA PubMed 
located_in perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Hyaluronan / mRNA binding family
NP_001078399.1
  • Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 1174 Blast hits to 1093 proteins in 244 species: Archae - 2; Bacteria - 52; Metazoa - 515; Fungi - 125; Plants - 182; Viruses - 23; Other Eukaryotes - 275 (source: NCBI BLink).
NP_001078400.1
  • Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 21958 Blast hits to 10880 proteins in 1019 species: Archae - 12; Bacteria - 7276; Metazoa - 6848; Fungi - 1552; Plants - 2999; Viruses - 314; Other Eukaryotes - 2957 (source: NCBI BLink).
NP_193416.1
  • Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9470370..9472594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117785.5 → NP_193416.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193416.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQG3, A8MQJ5, O23523
    UniProtKB/TrEMBL
    A0A178V3J2, A0A654FQ13
    Conserved Domains (2) summary
    pfam04774
    Location:147 → 252
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam09598
    Location:1 → 66
    Stm1_N

  2. NM_001084931.1 → NP_001078400.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078400.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V3J2
    Conserved Domains (1) summary
    pfam04774
    Location:137 → 242
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

  3. NM_001084930.1 → NP_001078399.1  Hyaluronan / mRNA binding family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078399.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23523
    Conserved Domains (1) summary
    pfam04774
    Location:57 → 162
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23523.1

Gene LinkOut

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