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SCL13 SCARECROW-like 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827435, updated on 18-Sep-2024

Summary

Official Symbol
SCL13
Official Full Name
SCARECROW-like 13
Primary source
TAIR:AT4G17230
Locus tag
AT4G17230
See related
Araport:AT4G17230
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4650C; FCAALL.225; SCARECROW-like 13
Summary
Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
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Genomic context

See SCL13 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (9660593..9663809, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene microtubule-associated proteins 70-5 Neighboring gene structural maintenance of chromosomes protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001341195.1
NM_117828.8

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
SCARECROW-like 13
NP_193456.4
  • SCARECROW-like 13 (SCL13); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like 5 (TAIR:AT1G50600.1); Has 2512 Blast hits to 2467 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9660593..9663809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117828.8NP_193456.4  SCARECROW-like 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193456.4

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JNF6, O23566, Q8W584, Q9M0M5, Q9XE57
    UniProtKB/TrEMBL
    A0A178UVK6, A0A1P8B5A9
    Conserved Domains (1) summary
    pfam03514
    Location:155525
    GRAS; GRAS domain family
  2. NM_001341195.1NP_001328648.1  SCARECROW-like 13 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JNF6, O23566, Q8W584, Q9M0M5, Q9XE57
    UniProtKB/TrEMBL
    A0A178UVK6, A0A1P8B5A9