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NS1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827443, updated on 18-Sep-2024

Summary

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Official Symbol
NS1
Official Full Name
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Primary source
TAIR:AT4G17300
Locus tag
AT4G17300
See related
Araport:AT4G17300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATNS1; DL4685W; FCAALL.396; OVA8; ovule abortion 8
Summary
Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis.
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Genomic context

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See NS1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Sequence:
Chromosome: 4; NC_003075.7 (9681348..9684984)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Mo25 family protein Neighboring gene Auxin-responsive family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene G2484-1 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and expression of an asparaginyl-tRNA synthetase gene located on chromosome IV of Arabidopsis thaliana and adjacent to a novel gene of 15 exons. Aubourg S, et al. Biochim Biophys Acta, 1998 Jul 9. PMID 9655910
  2. Duplication and quadruplication of Arabidopsis thaliana cysteinyl- and asparaginyl-tRNA synthetase genes of organellar origin. Peeters NM, et al. J Mol Evol, 2000 May. PMID 10824085
  3. Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana. Duchêne AM, et al. Proc Natl Acad Sci U S A, 2005 Nov 8. PMID 16251277, Free PMC Article
  4. Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis. Berg M, et al. Plant J, 2005 Dec. PMID 16297076
  5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_117835.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables asparagine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
  
enables asparagine-tRNA ligase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in asparaginyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within asparaginyl-tRNA aminoacylation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within plant ovule development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast stroma HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NP_193462.1
  • NS1; FUNCTIONS IN: asparagine-tRNA ligase activity; INVOLVED IN: asparaginyl-tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19374 Blast hits to 17086 proteins in 2835 species: Archae - 447; Bacteria - 14373; Metazoa - 505; Fungi - 670; Plants - 294; Viruses - 0; Other Eukaryotes - 3085 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9681348..9684984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341198.1 → NP_001328216.1  Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UXJ8, A0A1P8B3X2
    Conserved Domains (1) summary
    PLN02603
    Location:21 → 587
    PLN02603; asparaginyl-tRNA synthetase

  2. NM_117835.5 → NP_193462.1  Class II aminoacyl-tRNA and biotin synthetases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193462.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23573, O48593, Q564D6
    UniProtKB/TrEMBL
    A0A178UXJ8
    Conserved Domains (3) summary
    PLN02603
    Location:1 → 567
    PLN02603; asparaginyl-tRNA synthetase
    cd00776
    Location:205 → 562
    AsxRS_core; Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as ...
    cd04318
    Location:112 → 194
    EcAsnRS_like_N; EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O48593.3

Gene LinkOut

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