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TIP2;2 tonoplast intrinsic protein 2;2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827446, updated on 18-Sep-2024

Summary

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Official Symbol
TIP2;2
Official Full Name
tonoplast intrinsic protein 2;2
Primary source
TAIR:AT4G17340
Locus tag
AT4G17340
See related
Araport:AT4G17340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DELTA-TIP2; DL4705W; FCAALL.412; tonoplast intrinsic protein 2;2
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Genomic context

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See TIP2;2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (9698940..9700472)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene G2484-1 protein Neighboring gene auxin canalization protein (DUF828) Neighboring gene Formyl transferase Neighboring gene Oxidoreductase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In vivo imaging of the tonoplast intrinsic protein family in Arabidopsis roots. Gattolin S, et al. BMC Plant Biol, 2009 Nov 18. PMID 19922653, Free PMC Article
  2. The Arabidopsis abiotic stress-induced TSPO-related protein reduces cell-surface expression of the aquaporin PIP2;7 through protein-protein interactions and autophagic degradation. Hachez C, et al. Plant Cell, 2014 Dec. PMID 25538184, Free PMC Article
  3. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
  4. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117838.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables channel activity IEA
Inferred from Electronic Annotation
more info
  
enables water channel activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in central vacuole IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plant-type vacuole membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
tonoplast intrinsic protein 2;2
NP_193465.1
  • tonoplast intrinsic protein 2;2 (TIP2;2); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10928 Blast hits to 10884 proteins in 2182 species: Archae - 82; Bacteria - 5178; Metazoa - 1485; Fungi - 421; Plants - 2525; Viruses - 2; Other Eukaryotes - 1235 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9698940..9700472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117838.4 → NP_193465.1  tonoplast intrinsic protein 2;2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193465.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23577, Q41975
    UniProtKB/TrEMBL
    A0A178UJ23, A0A178UVY8, A0A5S9XTJ3
    Conserved Domains (1) summary
    PLN00166
    Location:1 → 250
    PLN00166; aquaporin TIP2; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q41975.2

Gene LinkOut

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