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Ribosomal protein L23/L15e family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827451, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein L23/L15e family protein
Primary source
TAIR:AT4G17390
Locus tag
AT4G17390
See related
Araport:AT4G17390
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
DL4730C; FCAALL.32
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Genomic context

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Location:
chromosome: 4
Exon count:
4
Sequence:
Chromosome: 4; NC_003075.7 (9714092..9715648, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene auxin canalization protein (DUF828) Neighboring gene Formyl transferase Neighboring gene Oxidoreductase family protein Neighboring gene MUTS-like protein 4 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DWNN domain, a CCHC-type zinc finger Neighboring gene Tryptophan RNA-binding attenuator protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Pendle AF, et al. Mol Biol Cell, 2005 Jan. PMID 15496452, Free PMC Article
  2. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  3. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  4. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475
  5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117843.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
part_of cytosolic large ribosomal subunit HDA PubMed 
located_in nucleolus HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein L23/L15e family protein
NP_193470.1
  • Ribosomal protein L23/L15e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15e (InterPro:IPR000439), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L15e, conserved site (InterPro:IPR020925); BEST Arabidopsis thaliana protein match is: Ribosomal protein L23/L15e family protein (TAIR:AT4G16720.1); Has 1380 Blast hits to 1379 proteins in 431 species: Archae - 314; Bacteria - 0; Metazoa - 407; Fungi - 163; Plants - 282; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    9714092..9715648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117843.4 → NP_193470.1  Ribosomal protein L23/L15e family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193470.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23582, Q8VYF1
    UniProtKB/TrEMBL
    A0A178V2E4, A0A384KUF3, A0A7G2F097, Q0WWU9
    Conserved Domains (1) summary
    PTZ00026
    Location:1 → 204
    PTZ00026; 60S ribosomal protein L15; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYF1.1

Gene LinkOut

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