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SH3 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827531, updated on 18-Sep-2024

Summary

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Official Full Name
SH3 domain-containing protein
Primary source
TAIR:AT4G18060
Locus tag
AT4G18060
See related
Araport:AT4G18060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F15J5.30; F15J5_30
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (10026650..10030033, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene eukaryotic translation initiation factor 4E Neighboring gene P-glycoprotein 9 Neighboring gene suppressor Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis. Kolb C, et al. Plant Physiol, 2015 Apr. PMID 25699591, Free PMC Article
  2. Regulation of ADL6 activity by its associated molecular network. Lam BC, et al. Plant J, 2002 Sep. PMID 12207647
  3. SH3 Domain-Containing Protein 2 Plays a Crucial Role at the Step of Membrane Tubulation during Cell Plate Formation. Ahn G, et al. Plant Cell, 2017 Jun. PMID 28584166, Free PMC Article
  4. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_117916.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 

General protein information

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Preferred Names
SH3 domain-containing protein
NP_193540.3
  • SH3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Neutrophil cytosol factor 2 p67phox (InterPro:IPR000108), Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G34660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10026650..10030033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117916.6 → NP_193540.3  SH3 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193540.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7W0, Q8W5A0, Q9SVW5
    UniProtKB/TrEMBL
    A0A178V6H0, A0A5S9XTL8
    Conserved Domains (2) summary
    cl12013
    Location:49 → 257
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
    cl17036
    Location:285 → 337
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L7W0.1

Gene LinkOut

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