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RNA-binding KH domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827566, updated on 18-Sep-2024

Summary

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Official Full Name
RNA-binding KH domain-containing protein
Primary source
TAIR:AT4G18375
Locus tag
AT4G18375
See related
Araport:AT4G18375
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28J12.2; F28J12_2
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Genomic context

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Location:
chromosome: 4
Exon count:
8
Sequence:
Chromosome: 4; NC_003075.7 (10152402..10155428)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene DEGP protease 5 Neighboring gene ncRNA Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene ncRNA Neighboring gene F-box family protein Neighboring gene TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001341281.1
NM_001341282.1
NM_117948.5

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA-binding KH domain-containing protein
NP_001319984.1
  • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G46190.1); Has 4753 Blast hits to 2281 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 3318; Fungi - 441; Plants - 848; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
NP_193572.1
  • RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT5G46190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10152402..10155428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_117948.5 → NP_193572.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193572.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P58223, Q8H0Y7
    UniProtKB/TrEMBL
    A0A178UU63, A0A5S9XTM9, A0A654FQZ7
    Conserved Domains (3) summary
    cd22459
    Location:311 → 381
    KH-I_PEPPER_rpt1_like; first type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana RNA-binding KH domain-containing protein PEPPER and similar proteins
    cd22462
    Location:538 → 603
    KH-I_HEN4_like_rpt5; fifth type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana KH domain-containing protein HEN4 and similar protein
    cl00098
    Location:140 → 212
    KH-I; K homology (KH) RNA-binding domain, type I

  2. NM_001341281.1 → NP_001319984.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2H1ZEM6

  3. NM_001341282.1 → NP_001328912.1  RNA-binding KH domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B642, A0A5S9XTM9, A0A654FQZ7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P58223.1

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