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RNA ligase/cyclic nucleotide phosphodiesterase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827629, updated on 18-Sep-2024

Summary

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Official Full Name
RNA ligase/cyclic nucleotide phosphodiesterase family protein
Primary source
TAIR:AT4G18940
Locus tag
AT4G18940
See related
Araport:AT4G18940
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13C5.110; F13C5_110
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (10372658..10373895)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene histone acetyltransferase (DUF1264) Neighboring gene RNA ligase/cyclic nucleotide phosphodiesterase family protein Neighboring gene Integrin-linked protein kinase family Neighboring gene K-box region and MADS-box transcription factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_118011.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA ligase/cyclic nucleotide phosphodiesterase family protein
NP_193629.1
  • RNA ligase/cyclic nucleotide phosphodiesterase family protein; FUNCTIONS IN: cyclic-nucleotide phosphodiesterase activity, catalytic activity; INVOLVED IN: RNA metabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), 2',3'-cyclic-nucleotide 3'-phosphodiesterase (InterPro:IPR012386); BEST Arabidopsis thaliana protein match is: RNA ligase/cyclic nucleotide phosphodiesterase family protein (TAIR:AT4G18930.1); Has 149 Blast hits to 149 proteins in 25 species: Archae - 3; Bacteria - 10; Metazoa - 0; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10372658..10373895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118011.3 → NP_193629.1  RNA ligase/cyclic nucleotide phosphodiesterase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193629.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V5S9, A0A654FQX1, O49408
    Conserved Domains (2) summary
    pfam07823
    Location:26 → 186
    CPDase; Cyclic phosphodiesterase-like protein
    pfam13563
    Location:35 → 182
    2_5_RNA_ligase2; 2'-5' RNA ligase superfamily
Nucleotide Protein
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