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LOC8276633 hydroxyacylglutathione hydrolase cytoplasmic [ Ricinus communis (castor bean) ]

Gene ID: 8276633, updated on 30-Nov-2023

Summary

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Gene symbol
LOC8276633
Gene description
hydroxyacylglutathione hydrolase cytoplasmic
Locus tag
RCOM_0690340
Gene type
protein coding
RefSeq status
MODEL
Organism
Ricinus communis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Genomic context

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See LOC8276633 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
102 current ASM1957865v1 (GCF_019578655.1) 6 NC_063261.1 (20887942..20890888, complement)
101 previous assembly JCVI_RCG_1.1 (GCF_000151685.1) Unplaced Scaffold NW_002994368.1 (690258..693245)

Chromosome 6 - NC_063261.1Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 18c Neighboring gene RING finger and transmembrane domain-containing protein 2-like Neighboring gene uncharacterized LOC8276632 Neighboring gene probable inactive receptor kinase At5g58300

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxyacylglutathione hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyacylglutathione hydrolase cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ricinus communis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1957865v1

Genomic

  1. NC_063261.1 Reference ASM1957865v1

    Range
    20887942..20890888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002520849.4 → XP_002520895.1  hydroxyacylglutathione hydrolase cytoplasmic isoform X1

    See identical proteins and their annotated locations for XP_002520895.1

    UniProtKB/TrEMBL
    B9S4H6
    Conserved Domains (3) summary
    PLN02469
    Location:1 → 258
    PLN02469; hydroxyacylglutathione hydrolase
    pfam16123
    Location:175 → 255
    HAGH_C; Hydroxyacylglutathione hydrolase C-terminus
    cd07723
    Location:6 → 174
    hydroxyacylglutathione_hydrolase_MBL-fold; hydroxyacylglutathione hydrolase, MBL-fold metallo-hydrolase domain

  2. XM_015720289.3 → XP_015575775.1  hydroxyacylglutathione hydrolase cytoplasmic isoform X2

    Conserved Domains (1) summary
    cd07723
    Location:6 → 174
    hydroxyacylglutathione_hydrolase_MBL-fold; hydroxyacylglutathione hydrolase, MBL-fold metallo-hydrolase domain
Nucleotide Protein
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