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Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827753, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Primary source
TAIR:AT4G20080
Locus tag
AT4G20080
See related
Araport:AT4G20080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18F4.180; F18F4_180
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (10865295..10867619)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene allantoate amidohydrolase Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene hypothetical protein (DUF626)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of Multiple C2 Domain and Transmembrane Region Proteins in Arabidopsis. Liu L, et al. Plant Physiol, 2018 Mar. PMID 29259105, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
colocalizes_with endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
NP_193741.1
  • Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT3G57880.1); Has 1196 Blast hits to 1025 proteins in 134 species: Archae - 0; Bacteria - 0; Metazoa - 399; Fungi - 32; Plants - 689; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10865295..10867619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118127.1 → NP_193741.1  Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193741.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49435
    UniProtKB/TrEMBL
    A0A178US95, A0A5S9XUK6, A0A654FR66
    Conserved Domains (4) summary
    cd04019
    Location:204 → 350
    C2C_MCTP_PRT_plant; C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08378
    Location:47 → 167
    C2B_MCTP_PRT_plant; C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    cd08379
    Location:362 → 490
    C2D_MCTP_PRT_plant; C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset
    pfam08372
    Location:618 → 774
    PRT_C; Plant phosphoribosyltransferase C-terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O49435.1

Gene LinkOut

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