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RABE1b RAB GTPase homolog E1B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827784, updated on 18-Sep-2024

Summary

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Official Symbol
RABE1b
Official Full Name
RAB GTPase homolog E1B
Primary source
TAIR:AT4G20360
Locus tag
AT4G20360
See related
Araport:AT4G20360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRAB8D; ATRABE1B; F9F13.10; F9F13_10; RAB GTPase homolog E1B
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Genomic context

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See RABE1b in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Sequence:
Chromosome: 4; NC_003075.7 (10989910..10992509)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene ribonuclease H2 subunit B Neighboring gene Transcription initiation factor TFIIE, beta subunit Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene oxidoreductase Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene PEBP (phosphatidylethanolamine-binding protein) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chloroplast Translation Elongation Factor EF-Tu/SVR11 Is Involved in var2-Mediated Leaf Variegation and Leaf Development in Arabidopsis. Liu S, et al. Front Plant Sci, 2019. PMID 30915096, Free PMC Article
  2. Arabidopsis RAB8A, RAB8B and RAB8D Proteins Interact with Several RTNLB Proteins and are Involved in the Agrobacterium tumefaciens Infection Process. Huang FC, et al. Plant Cell Physiol, 2021 Dec 3. PMID 34255832
  3. Arabidopsis Rab-E GTPases exhibit a novel interaction with a plasma-membrane phosphatidylinositol-4-phosphate 5-kinase. Camacho L, et al. J Cell Sci, 2009 Dec 1. PMID 19903693
  4. Four closely-related RING-type E3 ligases, APD1-4, are involved in pollen mitosis II regulation in Arabidopsis. Luo G, et al. J Integr Plant Biol, 2012 Oct. PMID 22897245
  5. The Arabidopsis class II sirtuin is a lysine deacetylase and interacts with mitochondrial energy metabolism. König AC, et al. Plant Physiol, 2014 Mar. PMID 24424322, Free PMC Article

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis RAB8A, RAB8B and RAB8D Proteins Interact with Several RTNLB Proteins and are Involved in the Agrobacterium tumefaciens Infection Process.
    Title: Arabidopsis RAB8A, RAB8B and RAB8D Proteins Interact with Several RTNLB Proteins and are Involved in the Agrobacterium tumefaciens Infection Process.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_118155.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within chloroplast organization IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within leaf development IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast nucleoid HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in nucleolus HDA PubMed 
located_in nucleus HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
RAB GTPase homolog E1B
NP_193769.1
  • RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    10989910..10992509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001341435.1 → NP_001329775.1  RAB GTPase homolog E1B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17745, Q8GTE7
    UniProtKB/TrEMBL
    A0A178UY83, A0A5S9XUK5, A0A7G2EZ99
    Conserved Domains (1) summary
    PLN03126
    Location:17 → 476
    PLN03126; Elongation factor Tu; Provisional

  2. NM_118155.2 → NP_193769.1  RAB GTPase homolog E1B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193769.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17745, Q8GTE7
    UniProtKB/TrEMBL
    A0A178UY83, A0A5S9XUK5, A0A7G2EZ99
    Conserved Domains (1) summary
    PLN03126
    Location:17 → 476
    PLN03126; Elongation factor Tu; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P17745.1

Gene LinkOut

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