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FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827831, updated on 18-Sep-2024

Summary

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Official Full Name
FAD-binding Berberine family protein
Primary source
TAIR:AT4G20830
Locus tag
AT4G20830
See related
Araport:AT4G20830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F21C20.180; F21C20_180
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Sequence:
Chromosome: 4; NC_003075.7 (11155453..11157806)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein Neighboring gene FAD-binding Berberine family protein Neighboring gene uncharacterized protein Neighboring gene FAD-binding Berberine family protein Neighboring gene tripeptidyl peptidase ii

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Four Arabidopsis berberine bridge enzyme-like proteins are specific oxidases that inactivate the elicitor-active oligogalacturonides. Benedetti M, et al. Plant J, 2018 Apr. PMID 29396998
  2. Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome. Stanley Kim H, et al. Plant J, 2005 Jan. PMID 15634198
  3. The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. Brugière S, et al. Phytochemistry, 2004 Jun. PMID 15276431
  4. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
  5. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_118201.3
NM_202851.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to oxidative stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in plant-type cell wall HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in plasmodesma HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
FAD-binding Berberine family protein
NP_193815.2
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, apoplast, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1); Has 4327 Blast hits to 4201 proteins in 643 species: Archae - 38; Bacteria - 1800; Metazoa - 2; Fungi - 1615; Plants - 732; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
NP_974580.1
  • FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: apoplast, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT4G20840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11155453..11157806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118201.3 → NP_193815.2  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193815.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFM8, Q3E9Y2, Q8H7B5, Q9SVG4
    UniProtKB/TrEMBL
    A0A178URW5, A0A654FR80
    Conserved Domains (3) summary
    COG0277
    Location:68 → 536
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam08031
    Location:477 → 534
    BBE; Berberine and berberine like
    cl19922
    Location:87 → 224
    FAD_binding_4; FAD binding domain

  2. NM_202851.1 → NP_974580.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974580.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US72
    Conserved Domains (3) summary
    COG0277
    Location:68 → 536
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam08031
    Location:477 → 534
    BBE; Berberine and berberine like
    cl19922
    Location:87 → 224
    FAD_binding_4; FAD binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SVG4.2

Gene LinkOut

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