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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827878, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT4G21300
Locus tag
AT4G21300
See related
Araport:AT4G21300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6K22.30; T6K22_30
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Genomic context

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Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_003075.7 (11336318..11339052)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene kinesin 1 Neighboring gene photosystem II subunit QA Neighboring gene ncRNA Neighboring gene transmembrane protein, putative (DUF1218) Neighboring gene ncRNA Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene Subtilase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. E+ subgroup PPR protein defective kernel 36 is required for multiple mitochondrial transcripts editing and seed development in maize and Arabidopsis. Wang G, et al. New Phytol, 2017 Jun. PMID 28277611
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AT4G21300 plays role in the mitochondrial transcripts editing and seed development.
    Title: E+ subgroup PPR protein defective kernel 36 is required for multiple mitochondrial transcripts editing and seed development in maize and Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_118248.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_193861.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G63370.1); Has 56339 Blast hits to 14414 proteins in 284 species: Archae - 1; Bacteria - 9; Metazoa - 94; Fungi - 190; Plants - 55188; Viruses - 0; Other Eukaryotes - 857 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    11336318..11339052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_118248.2 → NP_193861.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_193861.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49569, Q9STE1
    UniProtKB/TrEMBL
    A0A178V461, A0A5S9XUF8, A0A654FRD1
    Conserved Domains (2) summary
    PLN03077
    Location:107 → 828
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:610 → 637
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9STE1.1

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