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MYB3R2 myb domain protein 3r2 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 827977, updated on 18-Sep-2024

Summary

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Official Symbol
MYB3R2
Official Full Name
myb domain protein 3r2
Primary source
TAIR:AT4G00540
Locus tag
AT4G00540
See related
Araport:AT4G00540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATMYB3R2; C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2; F6N23.19; F6N23_19; myb domain protein 3r2; MYB DOMAIN PROTEIN 3R2; MYB3R-2; PC-MYB2
Summary
Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3).
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Genomic context

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See MYB3R2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Sequence:
Chromosome: 4; NC_003075.7 (234597..237582, complement)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Acyl-CoA thioesterase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene UvrABC system protein A Neighboring gene digalactosyl diacylglycerol deficient 2 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene NAD-dependent malic enzyme 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A systematic survey in Arabidopsis thaliana of transcription factors that modulate circadian parameters. Hanano S, et al. BMC Genomics, 2008 Apr 21. PMID 18426557, Free PMC Article
  2. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Causier B, et al. Plant Physiol, 2012 Jan. PMID 22065421, Free PMC Article
  3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_116278.1
NM_178945.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 3r2
NP_567179.1
  • myb domain protein 3r2 (MYB3R2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 13272 Blast hits to 8134 proteins in 555 species: Archae - 0; Bacteria - 0; Metazoa - 1137; Fungi - 983; Plants - 8207; Viruses - 4; Other Eukaryotes - 2941 (source: NCBI BLink).
NP_849276.2
  • myb domain protein 3r2 (MYB3R2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.2); Has 14074 Blast hits to 8120 proteins in 551 species: Archae - 0; Bacteria - 0; Metazoa - 1200; Fungi - 968; Plants - 8858; Viruses - 6; Other Eukaryotes - 3042 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    234597..237582 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_116278.1 → NP_567179.1  myb domain protein 3r2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_567179.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65263, Q9SPN3
    UniProtKB/TrEMBL
    A0A5S9XQE0, A0A654FKM8
    Conserved Domains (2) summary
    PLN03091
    Location:99 → 207
    PLN03091; hypothetical protein; Provisional
    pfam13921
    Location:47 → 112
    Myb_DNA-bind_6; Myb-like DNA-binding domain

  2. NM_178945.2 → NP_849276.2  myb domain protein 3r2 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849276.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UUU0, F4JHD4
    Conserved Domains (3) summary
    smart00717
    Location:103 → 154
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam00249
    Location:158 → 200
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam13921
    Location:106 → 166
    Myb_DNA-bind_6; Myb-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SPN3.1

Gene LinkOut

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